Eric,
Typically the diff mount that cracks is on the trust side (right) on the part of the bracket that looks like a tent, that is where my Six was cracked. I could feel it better than seeing it. The same cracks were on my 250, trust side and the stud had previously been shoved up the crossmember and welded before I got the car. A broken diff mount will make noise whenever you stess the diff by downshifting & decelerating, etc too.
It's very hard to fault diagnose these problems but taking a guess at want you describe as a clunk every revolution while jacked, it may be bad u-joints or a bad hub bearing. The u-joints can normally be greased and you can normally tell if you have a real bad one by checking for play. They usually will make a constant clicking noise that increses with speed or if they are real bad they will screech. Hubs are harder to tell if they are good or bad but will usually make a constamt roaring sound if bad. Also I am not so sure you can really tell much with the car jacked for there really is a whole different type of load put on everything once it is on the ground.
We didn't sat anything about he diff itself. I suppose the ring and pinnion could be worn too. How many miles do you have on your Six?
Unfortunatly most guys I know follow the practise of "Fault Diagnoses by Part Substitution". Start with the easy stuff. Yikes

What do you other guys say?
Good Luck, I will be at TRA for the rest of the week, I will check back then.
Darrell